preprocessHRD: Define additional properties of the sequencing data necessary...
In maxwell-lab/HRDex:
Description
Usage
Arguments
Details
Value
Examples
View source: R/preprocessHRD.R
Description
Define additional properties of the sequencing data necessary to compute HRD
Usage
1
preprocessHRD(seq.dat, ref)
Arguments
seq.dat
the raw sequencing data
ref
the reference genome to use (grch37, grch38)
Details
define chromosome size, arms, telomere position, and centromere position from reference data;
compute allelic imbalance and segment size
Value
seq.dat
Examples
1
2
3
4
seq.dat <- sub01.segments[ sub01.segments$chromosome == "chr1",]
seq.dat <- preprocessHRD( seq.dat )
seq.dat
maxwell-lab/HRDex documentation built on May 3, 2020, 9:01 p.m.
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Description Usage Arguments Details Value Examples
View source: R/preprocessHRD.R
Description
Define additional properties of the sequencing data necessary to compute HRD
Usage
1 | preprocessHRD(seq.dat, ref)
|
Arguments
seq.dat |
the raw sequencing data |
ref |
the reference genome to use (grch37, grch38) |
Details
define chromosome size, arms, telomere position, and centromere position from reference data; compute allelic imbalance and segment size
Value
seq.dat
Examples
1 2 3 4 | seq.dat <- sub01.segments[ sub01.segments$chromosome == "chr1",]
seq.dat <- preprocessHRD( seq.dat )
seq.dat
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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