getLOH: Compute the number of loss of heterozygosity (LOH) events
In maxwell-lab/HRDex:
Description
Usage
Arguments
Details
Description
Compute the number of loss of heterozygosity (LOH) events
Usage
1
getLOH(seq.dat, min.seg.size = 1.5e+07)
Arguments
seq.dat
a data.frame of the sequencing data
min.seg.size
minimum size of the seqgment
ploidy
the estimated ploidy
Details
raw LOH is calculated as the number of events where: the segment length is greater than the minimum segment size
(default of 15e06), and the segment size is less than 90
maxwell-lab/HRDex documentation built on May 3, 2020, 9:01 p.m.
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Description Usage Arguments Details
Description
Compute the number of loss of heterozygosity (LOH) events
Usage
1 | getLOH(seq.dat, min.seg.size = 1.5e+07)
|
Arguments
seq.dat |
a data.frame of the sequencing data |
min.seg.size |
minimum size of the seqgment |
ploidy |
the estimated ploidy |
Details
raw LOH is calculated as the number of events where: the segment length is greater than the minimum segment size (default of 15e06), and the segment size is less than 90
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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