FindConservedMarkers: Finds markers that are conserved between the two groups

In mayer-lab/SeuratForMayer2018: Seurat : R Toolkit for Single Cell Genomics

Description

Finds markers that are conserved between the two groups

Usage

FindConservedMarkers(object, ident.1, ident.2 = NULL, grouping.var, ...)

Arguments

object	Seurat object
ident.1	Identity class to define markers for
ident.2	A second identity class for comparison. If NULL (default) - use all other cells for comparison.
grouping.var	grouping variable
...	parameters to pass to FindMarkers

Value

Matrix containing a ranked list of putative conserved markers, and associated statistics (p-values within each group and a combined p-value (fisher_pval), percentage of cells expressing the marker, average differences)

mayer-lab/SeuratForMayer2018 documentation built on May 25, 2019, 9:34 p.m.