NormalizeData: Normalize Assay Data

In mayer-lab/SeuratForMayer2018: Seurat : R Toolkit for Single Cell Genomics

Description

Normalize data for a given assay

Usage

NormalizeData(object, assay.type = "RNA",
  normalization.method = "LogNormalize", scale.factor = 10000,
  display.progress = TRUE)

Arguments

object	Seurat object
assay.type	Type of assay to normalize for (default is RNA), but can be changed for multimodal analyses.
normalization.method	Method for normalization. Default is log-normalization (LogNormalize). More methods to be added very shortly.
scale.factor	Sets the scale factor for cell-level normalization
display.progress	display progress bar for scaling procedure.

Value

Returns object after normalization. Normalized data is stored in data or scale.data slot, depending on the method

mayer-lab/SeuratForMayer2018 documentation built on May 25, 2019, 9:34 p.m.