ScaleDataR: Old R based implementation of ScaleData. Scales and centers...

In mayer-lab/SeuratForMayer2018: Seurat : R Toolkit for Single Cell Genomics

Description

Old R based implementation of ScaleData. Scales and centers the data

Usage

ScaleDataR(object, genes.use = NULL, data.use = NULL, do.scale = TRUE,
  do.center = TRUE, scale.max = 10)

Arguments

object	Seurat object
genes.use	Vector of gene names to scale/center. Default is all genes in object@data.
data.use	Can optionally pass a matrix of data to scale, default is object@data[genes.use,]
do.scale	Whether to scale the data.
do.center	Whether to center the data.
scale.max	Max value to accept for scaled data. The default is 10. Setting this can help reduce the effects of genes that are only expressed in a very small number of cells.

Value

Returns a seurat object with [e-mail] updated with scaled and/or centered data.

mayer-lab/SeuratForMayer2018 documentation built on May 25, 2019, 9:34 p.m.