VizDimReduction: Visualize Dimensional Reduction genes

In mayer-lab/SeuratForMayer2018: Seurat : R Toolkit for Single Cell Genomics

Description

Visualize top genes associated with reduction components

Usage

VizDimReduction(object, reduction.type = "pca", dims.use = 1:5,
  num.genes = 30, use.full = FALSE, font.size = 0.5, nCol = NULL,
  do.balanced = FALSE)

Arguments

object	Seurat object
reduction.type	Reduction technique to visualize results for
dims.use	Number of dimensions to display
num.genes	Number of genes to display
use.full	Use reduction values for full dataset (i.e. projected dimensional reduction values)
font.size	Font size
nCol	Number of columns to display
do.balanced	Return an equal number of genes with + and - scores. If FALSE (default), returns the top genes ranked by the scores absolute values

Value

Graphical, no return value

mayer-lab/SeuratForMayer2018 documentation built on May 25, 2019, 9:34 p.m.