mcalgaro93/benchdamic
Benchmark of differential abundance methods on microbiome data

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mcalgaro93/benchdamic: Benchmark of differential abundance methods on microbiome data
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API

API for mcalgaro93/benchdamic
Benchmark of differential abundance methods on microbiome data

Global functions
CAT Man page
DA_ALDEx2 Man page Source code
DA_ANCOM Man page Source code
DA_DESeq2 Man page Source code
DA_MAST Man page Source code
DA_Maaslin2 Man page Source code
DA_NOISeq Man page Source code
DA_Seurat Man page Source code
DA_ZicoSeq Man page Source code
DA_basic Man page Source code
DA_corncob Man page Source code
DA_dearseq Man page Source code
DA_edgeR Man page Source code
DA_limma Man page Source code
DA_linda Man page Source code
DA_metagenomeSeq Man page Source code
DA_mixMC Man page Source code
RMSE Man page Source code
addKnowledge Man page Source code
areaCAT Man page Source code
checkNormalization Man page Source code
createColors Man page Source code
createConcordance Man page Source code
createEnrichment Man page Source code
createMocks Man page Source code
createPositives Man page Source code
createSplits Man page Source code
createTIEC Man page Source code
enrichmentTest Man page Source code
extractDA Man page Source code
extractStatistics Man page Source code
fitDM Man page Source code
fitHURDLE Man page Source code
fitModels Man page Source code
fitNB Man page Source code
fitZIG Man page Source code
fitZINB Man page Source code
getDA Man page Source code
getPositives Man page Source code
getStatistics Man page Source code
get_counts_metadata Man page Source code
iterative_ordering Man page Source code
meanDifferences Man page Source code
microbial_metabolism Man page
norm_CSS Man page Source code
norm_DESeq2 Man page Source code
norm_TSS Man page Source code
norm_edgeR Man page Source code
plotConcordance Man page Source code
plotConcordanceDendrogram Man page Source code
plotConcordanceHeatmap Man page Source code
plotContingency Man page Source code
plotEnrichment Man page Source code
plotFDR Man page Source code
plotFPR Man page Source code
plotKS Man page Source code
plotLogP Man page Source code
plotMD Man page Source code
plotMutualFindings Man page Source code
plotPositives Man page Source code
plotQQ Man page Source code
plotRMSE Man page Source code
prepareObserved Man page Source code
ps_plaque_16S Man page
ps_stool_16S Man page
runDA Man page Source code
runMocks Man page Source code
runNormalizations Man page Source code
runSplits Man page Source code
setNormalizations Man page Source code
set_ALDEx2 Man page Source code
set_ANCOM Man page Source code
set_DESeq2 Man page Source code
set_MAST Man page Source code
set_Maaslin2 Man page Source code
set_NOISeq Man page Source code
set_Seurat Man page Source code
set_ZicoSeq Man page Source code
set_basic Man page Source code
set_corncob Man page Source code
set_dearseq Man page Source code
set_edgeR Man page Source code
set_limma Man page Source code
set_linda Man page Source code
set_metagenomeSeq Man page Source code
set_mixMC Man page Source code
weights_ZINB Man page Source code
mcalgaro93/benchdamic documentation built on Nov. 23, 2024, 5:06 p.m.

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