Chromosome-class | Class Chromosome |
compareEnrichment | Compare enrichment analysis between two SNPs list |
Enrichment-class | An S4 class Enrichment |
EnrichSNP-class | Class EnrichSNP |
excludeSNP | Exclude SNPs from Enrichment analysis |
getEnrichSNP | Get all eSNP/xSNP which are enriched |
initFiles | Initialize files for enrichment analysis |
internal | ~ Internal: snpEnrichment objects and methods ~ |
plot | Plot method (S4) for Enrichment object |
readEnrichment | Read and create EnrichmentRatio object |
reSample | Compute enrichment analysis on an Enrichment object |
reset | Reset methods. |
snpEnrichment | ~ Overview: SNPs Enrichment Analysis With Sampling ~ |
toyEnrichment | Toy dataset with SNP data |
transcript | Transcript information in order to check the CIS status for... |
writeLD | Linkage Disequilibrium (LD) computation with PLINK |
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