internal: ~ Internal: snpEnrichment objects and methods ~

In mcanouil/snpEnrichment: SNPs Enrichment Analysis With Sampling

Description

These are not intended to be called by the user. If you have a specific need or for more details on snpEnrichment, feel free to contact the author.

Usage

.mclapply(X, FUN, mc.cores, ...)

.EnrichSNP.show(object)

.Chromosome.show(object)

.Enrichment.show(object)

.checkFilePath(path)

.checkSignalFile(signalFile)

.checkSnpInfoDir(snpInfoDir)

.checkSnpListDir(snpListDir, pattern)

.checkTranscript(data, transcriptFile, distThresh)

.compareEnrich(object1, object2, nSample, empiricPvalue, sigThresh,
  MAFpool, mc.cores)

.enrichmentRatio(table)

.readFiles(pattern, snpInfoDir, snpListDir, distThresh)

.readFreq(pattern, snpInfoDir)

.readLD(pattern, snpInfoDir, ldDir)

.readSignal(pattern)

.readSNP(pattern, snpListDir)

.readTranscript(transcriptFile)

.reSample(object, nSample, empiricPvalue, sigThresh, MAFpool, mc.cores)

.splitByChrom(pattern, snpListFile, directory)

.verbose(expr)

.writeFreq(pattern, snpInfoDir)

.writeSignal(pattern, snpInfoDir, signalFile)

GC(verbose = getOption("verbose"), reset = FALSE)

is.EnrichSNP(object)

is.chromosome(object)

is.enrichment(object)

mcanouil/snpEnrichment documentation built on Sept. 19, 2021, 1:21 a.m.