excludeSNP: Exclude SNPs from Enrichment analysis
In mcanouil/snpEnrichment: SNPs Enrichment Analysis With Sampling

Description Usage Arguments Value Examples

Remove a specify set of SNPs and compute a new enrichment analysis.

1	excludeSNP(object, excludeFile, mc.cores = 1)

`object`	An Enrichment object filled by reSample.
`excludeFile`	A list of SNPs to remove from a previous enrichment analysis. A path to a file which the first column are the SNPs.
`mc.cores`	numeric: the number of cores to use (default is `1`), i.e., at most how many child processes will be run simultaneously. Must be at least one, and parallelization requires at least two cores.

Return the object given in argument where lists of SNPs are updated by removing SNPs in excludeFile.

if (interactive()) {
  data(toyEnrichment)
  excludeFile <- c(
    "rs4376885", "rs17690928", "rs6460708", "rs13061537", "rs11769827",
    "rs12717054", "rs2907627", "rs1380109", "rs7024214", "rs7711972",
    "rs9658282", "rs11750720", "rs1793268", "rs774568", "rs6921786",
    "rs1699031", "rs6994771", "rs16926670", "rs465612", "rs3012084",
    "rs354850", "rs12803455", "rs13384873", "rs4364668", "rs8181047",
    "rs2179993", "rs12049335", "rs6079926", "rs2175144", "rs11564427",
    "rs7786389", "rs7005565", "rs17423335", "rs12474102", "rs191314",
    "rs10513168", "rs1711437", "rs1992620", "rs283115", "rs10754563",
    "rs10851727", "rs2173191", "rs7661353", "rs1342113", "rs7042073",
    "rs1567445", "rs10120375", "rs550060", "rs3761218", "rs4512977"
  )
  # OR
  excludeFile <- system.file("extdata/Exclude/toyExclude.txt", package = "snpEnrichment")

  toyEnrichment_exclude <- excludeSNP(toyEnrichment, excludeFile, mc.cores = 1)
  toyEnrichment_exclude
}