snpEnrichment: ~ Overview: SNPs Enrichment Analysis With Sampling ~

In mcanouil/snpEnrichment: SNPs Enrichment Analysis With Sampling

Description

Implements classes and methods for large scale SNP enrichment analysis using a sampling approach (e.g. SNPs associated with genes expression in a GWAS signal).

Details

Implements classes and methods for large-scale SNP enrichment analysis (e.g., SNPs associated with genes expression in a GWAS signal).

Note

Internal data management in snpEnrichment use RefSNP (rs) IDs.

Author(s)

Maintainer: Mickaël Canouil [e-mail]

Other contributors:

• Loic Yengo [e-mail] [contributor]

See Also

• Overview: snpEnrichment

• Classes: Enrichment Chromosome

• Methods:

  • enrichment

  • chromosome

  • getEnrichSNP

  • plot

  • reSample

  • reset

• Functions:

  • initFiles

  • writeLD

  • excludeSNP

  • readEnrichment

  • compareEnrichment

mcanouil/snpEnrichment documentation built on Sept. 19, 2021, 1:21 a.m.