plot: Plot method (S4) for Enrichment object

In mcanouil/snpEnrichment: SNPs Enrichment Analysis With Sampling

Description

plot is a generic function for plotting of R objects. The function invokes particular methods which depend on the class of the first argument.

Arguments

x	An object of class Enrichment which the Z statistics or p-values have to be drawn.
what	Default "Genome". Plot Z statistics or p-values for the defined what, i.e., "All", "Genome" or numeric vector.
type	Plot the selected analysis for "eSNP" and/or "xSNP".
ggplot	Use ggplot (default FALSE) instead of classic plot method.
pvalue	If TRUE, p-value convergense is plotted. Otherwise, Z statistic is plotted.
...	Arguments to be passed to methods, such as graphical parameters (see par).

Examples

if (interactive()) {
  data(toyEnrichment)
  reSample(toyEnrichment, 10)
  plot(toyEnrichment)
}

mcanouil/snpEnrichment documentation built on Sept. 19, 2021, 1:21 a.m.