Man pages for michaelwitting/wormLipidPredictR
Lipid reaction prediction based on WormJam
| add_attributes | Add attributes to igraph object |
| add_edge_attributes | Add edge attributes to 'igraph' object |
| add_edge_attributes_from_data.frame | Add edge attributes to 'igraph' object from 'data.frame' |
| add_vertex_attributes | Add vertex attributes to 'igraph' object |
| collapse_network | Collapse network by eliminating vertices with unmeasured... |
| create_reaction_adjacency_matrix | Create adjacency matrix from reactions |
| create_reactions | Create reaction network for given reactions of lipid... |
| create_via_chebi | create_via_chebi |
| dot-add_products | Produce products by replacing strings of substrates |
| dot-check_colnames_substrates_combinations | Check if correct colnames are in 'substrates_combinations' |
| dot-check_reaction | Check if reaction is implemented |
| dot-create_list_products_df_with_template | Create the object to return in 'create_reaction' |
| dot-create_list_with_template | Create list and substitute substrates/products |
| dot-create_reaction | Create reaction for a given reaction of lipid metabolism |
| dot-create_substrates_combinations | Create substrates combinations |
| dot-create_template | Create template with mininum information or return a given... |
| find_RHEA_ids_from_ids | Find RHEA ids from ids |
| find_RHEA_ids_from_SMILES | Find RHEA ids from SMILES |
| getRheaIDsFromProteinID | Get RHEA IDs from protein ID |
| get_valid_edges | Get valid edges |
| isolate_radyls | Get all fatty acyls, alkyls and alkenyls |
| mappingTable | Create a mapping table to map between LipidNetworkPredictR... |
| obtain_ChEBI_of_feature | Obtain ChEBI ids of features |
| obtain_substrates_products | Obtain substrates and products |
| plot_scores | Plot the deregulation scores of ChEBI identifiers |
| r_GPStrGen | r_GPStrGen |
| run_decouple | Run decouple |
| select_substrates_or_products | Select substrates or products |
| translate_ChEBI_to_SMILES | Translate ChEBI to SMILES |
| translate_id_to_ChEBI | Translate ID to ChEBI |
