.create_list_products_df_with_template | R Documentation |
create_reaction
Helper function for create_reaction
.
The function .create_list_reactants_with_template
will return a
list of length 2 containing the reactants (in the first entry) and the
updated template
object (in the second entry).
.create_list_reactants_with_template(df_reaction, template)
df_reaction |
|
template |
|
Depending on the reaction
, the first list entry will contain one or
multiple entries.
list of length 2
Thomas Naake, thomasnaake@googlemail.com
FA <- c("FA(14:0(12Me))", "FA(16:0(14Me))", "FA(15:1(9Z)(14Me))",
"FA(17:0(16Me))", "FA(12:0(11Me))", "FA(13:0(12Me))", "FA(14:0(13Me))",
"FA(15:0(14Me))", "FA(16:0(15Me))", "FA(12:0)", "FA(14:0)")
substrates <- list(FA = FA)
reaction <- "RHEA:15421"
## create template
template <- LipidNetworkPredictR:::.create_template(template = NA,
reaction = reaction)
## create data.frame of substrates
df_substrates <- LipidNetworkPredictR:::.create_substrates_combinations(
substrates = substrates,
constraints = "", negate = FALSE)
## add products to data.frame
df_reaction <- LipidNetworkPredictR:::.add_products(
substrates = df_substrates,
reaction = reaction)
## make new data.frame with reaction template
LipidNetworkPredictR:::.create_list_reactants_with_template(
df_reaction = df_reaction,
template = template)
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