Files in michaelwitting/wormLipidPredictR

Lipid reaction prediction based on WormJam

.Rbuildignore

.github/workflows/check-bioc.yml

.gitignore

DESCRIPTION

NAMESPACE

R/Utils_lipidmapstools.R R/create_reaction.R R/helper_.add_products.R R/helper_.check_reaction.R R/helper_.create_df_with_template.R R/helper_.create_list_reactants_with_template.R R/helper_.create_substrates_combination.R R/helper_.create_template.R R/helper_parser_lipids.R R/helper_rhea.R R/id_conversion.R README.md

inst/celegans_example.tsv

inst/extdata/celegans_fatty_acids_GL_GP.txt

inst/extdata/celegans_fatty_acids_SPH.txt

inst/extdata/lipidmapstools/README.txt

inst/extdata/lipidmapstools/bin/CLStrGen.pl

inst/extdata/lipidmapstools/bin/FAStrGen.pl

inst/extdata/lipidmapstools/bin/GLStrGen.pl

inst/extdata/lipidmapstools/bin/GPStrGen.pl

inst/extdata/lipidmapstools/bin/LMStrGen.pl

inst/extdata/lipidmapstools/bin/SPStrGen.pl

inst/extdata/lipidmapstools/bin/STStrGen.pl

inst/extdata/lipidmapstools/docs/html/CLStr.html

inst/extdata/lipidmapstools/docs/html/CLStrGen.html

inst/extdata/lipidmapstools/docs/html/ChainAbbrev.html

inst/extdata/lipidmapstools/docs/html/ChainStr.html

inst/extdata/lipidmapstools/docs/html/FAStr.html

inst/extdata/lipidmapstools/docs/html/FAStrGen.html

inst/extdata/lipidmapstools/docs/html/GLStr.html

inst/extdata/lipidmapstools/docs/html/GLStrGen.html

inst/extdata/lipidmapstools/docs/html/GPStr.html

inst/extdata/lipidmapstools/docs/html/GPStrGen.html

inst/extdata/lipidmapstools/docs/html/LMAPSStr.html

inst/extdata/lipidmapstools/docs/html/LMStr.html

inst/extdata/lipidmapstools/docs/html/LMStrGen.html

inst/extdata/lipidmapstools/docs/html/LipidMAPSLogo.jpg

inst/extdata/lipidmapstools/docs/html/LipidMAPSToolsDocs.css

inst/extdata/lipidmapstools/docs/html/ModulesIndex.html

inst/extdata/lipidmapstools/docs/html/README.html

inst/extdata/lipidmapstools/docs/html/SPChainAbbrev.html

inst/extdata/lipidmapstools/docs/html/SPStr.html

inst/extdata/lipidmapstools/docs/html/SPStrGen.html

inst/extdata/lipidmapstools/docs/html/STStr.html

inst/extdata/lipidmapstools/docs/html/STStrGen.html

inst/extdata/lipidmapstools/docs/html/ScriptsIndex.html

inst/extdata/lipidmapstools/docs/html/index.html

inst/extdata/lipidmapstools/docs/man1/CLStrGen.1

inst/extdata/lipidmapstools/docs/man1/FAStrGen.1

inst/extdata/lipidmapstools/docs/man1/GLStrGen.1

inst/extdata/lipidmapstools/docs/man1/GPStrGen.1

inst/extdata/lipidmapstools/docs/man1/LMStrGen.1

inst/extdata/lipidmapstools/docs/man1/SPStrGen.1

inst/extdata/lipidmapstools/docs/man1/STStrGen.1

inst/extdata/lipidmapstools/docs/man3/CLStr.3

inst/extdata/lipidmapstools/docs/man3/ChainAbbrev.3

inst/extdata/lipidmapstools/docs/man3/ChainStr.3

inst/extdata/lipidmapstools/docs/man3/FAStr.3

inst/extdata/lipidmapstools/docs/man3/GLStr.3

inst/extdata/lipidmapstools/docs/man3/GPStr.3

inst/extdata/lipidmapstools/docs/man3/LMAPSStr.3

inst/extdata/lipidmapstools/docs/man3/LMStr.3

inst/extdata/lipidmapstools/docs/man3/SPChainAbbrev.3

inst/extdata/lipidmapstools/docs/man3/SPStr.3

inst/extdata/lipidmapstools/docs/man3/STStr.3

inst/extdata/lipidmapstools/docs/pdf/CLStr.pdf inst/extdata/lipidmapstools/docs/pdf/CLStrGen.pdf inst/extdata/lipidmapstools/docs/pdf/ChainAbbrev.pdf inst/extdata/lipidmapstools/docs/pdf/ChainStr.pdf inst/extdata/lipidmapstools/docs/pdf/FAStr.pdf inst/extdata/lipidmapstools/docs/pdf/FAStrGen.pdf inst/extdata/lipidmapstools/docs/pdf/GLStr.pdf inst/extdata/lipidmapstools/docs/pdf/GLStrGen.pdf inst/extdata/lipidmapstools/docs/pdf/GPStr.pdf inst/extdata/lipidmapstools/docs/pdf/GPStrGen.pdf inst/extdata/lipidmapstools/docs/pdf/LMAPSStr.pdf inst/extdata/lipidmapstools/docs/pdf/LMStr.pdf inst/extdata/lipidmapstools/docs/pdf/LMStrGen.pdf inst/extdata/lipidmapstools/docs/pdf/README.pdf inst/extdata/lipidmapstools/docs/pdf/SPChainAbbrev.pdf inst/extdata/lipidmapstools/docs/pdf/SPStr.pdf inst/extdata/lipidmapstools/docs/pdf/SPStrGen.pdf inst/extdata/lipidmapstools/docs/pdf/STStr.pdf inst/extdata/lipidmapstools/docs/pdf/STStrGen.pdf inst/extdata/lipidmapstools/docs/pdfa4/CLStr.pdf inst/extdata/lipidmapstools/docs/pdfa4/CLStrGen.pdf inst/extdata/lipidmapstools/docs/pdfa4/ChainAbbrev.pdf inst/extdata/lipidmapstools/docs/pdfa4/ChainStr.pdf inst/extdata/lipidmapstools/docs/pdfa4/FAStr.pdf inst/extdata/lipidmapstools/docs/pdfa4/FAStrGen.pdf inst/extdata/lipidmapstools/docs/pdfa4/GLStr.pdf inst/extdata/lipidmapstools/docs/pdfa4/GLStrGen.pdf inst/extdata/lipidmapstools/docs/pdfa4/GPStr.pdf inst/extdata/lipidmapstools/docs/pdfa4/GPStrGen.pdf inst/extdata/lipidmapstools/docs/pdfa4/LMAPSStr.pdf inst/extdata/lipidmapstools/docs/pdfa4/LMStr.pdf inst/extdata/lipidmapstools/docs/pdfa4/LMStrGen.pdf inst/extdata/lipidmapstools/docs/pdfa4/README.pdf inst/extdata/lipidmapstools/docs/pdfa4/SPChainAbbrev.pdf inst/extdata/lipidmapstools/docs/pdfa4/SPStr.pdf inst/extdata/lipidmapstools/docs/pdfa4/SPStrGen.pdf inst/extdata/lipidmapstools/docs/pdfa4/STStr.pdf inst/extdata/lipidmapstools/docs/pdfa4/STStrGen.pdf

inst/extdata/lipidmapstools/docs/txt/CLStr.txt

inst/extdata/lipidmapstools/docs/txt/CLStrGen.txt

inst/extdata/lipidmapstools/docs/txt/ChainAbbrev.txt

inst/extdata/lipidmapstools/docs/txt/ChainStr.txt

inst/extdata/lipidmapstools/docs/txt/FAStr.txt

inst/extdata/lipidmapstools/docs/txt/FAStrGen.txt

inst/extdata/lipidmapstools/docs/txt/GLStr.txt

inst/extdata/lipidmapstools/docs/txt/GLStrGen.txt

inst/extdata/lipidmapstools/docs/txt/GPStr.txt

inst/extdata/lipidmapstools/docs/txt/GPStrGen.txt

inst/extdata/lipidmapstools/docs/txt/LMAPSStr.txt

inst/extdata/lipidmapstools/docs/txt/LMStr.txt

inst/extdata/lipidmapstools/docs/txt/LMStrGen.txt

inst/extdata/lipidmapstools/docs/txt/SPChainAbbrev.txt

inst/extdata/lipidmapstools/docs/txt/SPStr.txt

inst/extdata/lipidmapstools/docs/txt/SPStrGen.txt

inst/extdata/lipidmapstools/docs/txt/STStr.txt

inst/extdata/lipidmapstools/docs/txt/STStrGen.txt

inst/extdata/lipidmapstools/lib/CLStr.pm

inst/extdata/lipidmapstools/lib/ChainAbbrev.pm

inst/extdata/lipidmapstools/lib/ChainStr.pm

inst/extdata/lipidmapstools/lib/FAStr.pm

inst/extdata/lipidmapstools/lib/FileUtil.pm

inst/extdata/lipidmapstools/lib/GLStr.pm

inst/extdata/lipidmapstools/lib/GPStr.pm

inst/extdata/lipidmapstools/lib/LMAPSStr.pm

inst/extdata/lipidmapstools/lib/LMStr.pm

inst/extdata/lipidmapstools/lib/SPChainAbbrev.pm

inst/extdata/lipidmapstools/lib/SPStr.pm

inst/extdata/lipidmapstools/lib/STStr.pm

inst/extdata/lipidmapstools/lib/TextUtil.pm

inst/extdata/load_rhea_datasets.R

inst/extdata/rhea-chebi-smiles.tsv

inst/extdata/rhea-directions.tsv

inst/extdata/rhea-reaction-smiles.tsv

inst/rhea_reactions.tsv

man/create_reaction_adjacency_matrix.Rd man/create_reactions.Rd man/dot-add_products.Rd man/dot-check_colnames_substrates_combinations.Rd man/dot-check_reaction.Rd man/dot-create_df_with_template.Rd man/dot-create_list_products_df_with_template.Rd man/dot-create_reaction.Rd man/dot-create_substrates_combinations.Rd man/dot-create_template.Rd man/getRheaIDsFromProteinID.Rd man/isolate_radyls.Rd man/r_GPStrGen.Rd tests/testthat.R tests/testthat/test_create_reaction.R tests/testthat/test_parser_lipids.R tests/testthat/test_rhea.R

vignettes/.gitignore

vignettes/LipidNetworkPredictR_manual.Rmd vignettes/LipidNetworkPredictR_with_reaction_order.Rmd

vignettes/images/LPA_to_PA.png

michaelwitting/wormLipidPredictR documentation built on July 1, 2023, 9:20 p.m.