adpcr-class: Class '"adpcr"' - end-point array digital PCR experiments

In michbur/dpcR: Digital PCR Analysis

Class "adpcr" - end-point array digital PCR experiments

Description

A class specifically designed to contain results from end-point array digital PCR experiments. Data is represented as matrix, where each column describes different experiment. Type of data in all columns is specified in slot "type". Inherits from dpcr.

Details

For more in-depth explanation of digital PCR data structure, see dpcr.

Slots

col_names

"character" vector naming columns in the array.

row_names

"character" vector naming rows in the array.

row_id

"integer" vector providing row indices of all runs.

col_id

"integer" vector providing column indices of all runs.

panel_id

"factor" naming the panel to which experiment belong.

Author(s)

Michal Burdukiewicz.

See Also

Data management: adpcr2panel, bind_dpcr, extract_run.

Plotting: plot_panel.

Tests: test_panel.

Simulation: sim_adpcr.

Real-time array digital PCR: rtadpcr.

Droplet digital PCR: dpcr.

Examples

rand_array <- sim_adpcr(400, 1600, 100, pos_sums = FALSE, n_panels = 5)
one_rand_array <- extract_run(rand_array, 1)
plot_panel(one_rand_array, 40, 40)

michbur/dpcR documentation built on Nov. 17, 2022, 5:02 a.m.