get.probe.matrix: get.probe.matrix

In microbiome/RPA: RPA: Robust Probabilistic Averaging for probe-level analysis

get.probe.matrix

Description

Get probe matrix.

Usage

get.probe.matrix(
  cels,
  cdf = NULL,
  quantile.basis,
  bg.method = "rma",
  normalization.method = "quantiles",
  batch = NULL,
  verbose = TRUE
)

Arguments

cels	List of CEL files to preprocess
cdf	Specify an alternative CDF environment
quantile.basis	Pre-calculated basis for quantile normalization in log2 domain
bg.method	Specify background correction method. See bgcorrect.methods() for options.
normalization.method	normalization method
batch	batch
verbose	Print progress information during computation

Details

Returns background-corrected, quantile normalized log2 probes x samples matrix

Author(s)

Leo Lahti [e-mail]

References

See citation("RPA")

Examples

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microbiome/RPA documentation built on April 9, 2023, 10:59 a.m.