get.probeset: Get probeset
In microbiome/RPA: RPA: Robust Probabilistic Averaging for probe-level analysis

get.probeset

R Documentation

Get probeset

Description

Get probeset matrix.

Usage

get.probeset(name, level, taxonomy, probedata, log10 = TRUE)

Arguments

`name`	name
`level`	taxonomic level
`taxonomy`	taxonomy
`probedata`	oligos vs. samples preprocessed data matrix; absolute scale
`log10`	Logical. Logarithmize the data TRUE/FALSE

Value

probeset data matrix

Author(s)

Contact: Leo Lahti microbiome-admin@googlegroups.com

References

See citation('microbiome')

Examples

  #taxonomy <- GetPhylogeny('HITChip', 'filtered')
  #data.dir <- system.file("extdata", package = "microbiome")
  #probedata <- read_hitchip(data.dir, "rpa")$probedata
  #ps <- get.probeset('Akkermansia', 'L2', taxonomy, probedata)

microbiome/RPA documentation built on April 9, 2023, 10:59 a.m.