retrieve.probesets: Retrieve probesets
In microbiome/RPA: RPA: Robust Probabilistic Averaging for probe-level analysis
View source: R/retrieve.probesets.hitchip.R
retrieve.probesets R Documentation
Retrieve probesets
Description
List probes for each probeset in taxonomic data.
Usage
retrieve.probesets(tax.table, level = "species", name = NULL)
Arguments
tax.table
data.frame with oligo - phylotype mapping info
level
phylotype level for probesets
name
specify phylotypes to check (optional)
Value
A list. Probes for each phylotype.
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
Examples
#tax.table <- GetPhylogeny('HITChip')
#sets <- retrieve.probesets(tax.table, 'species', 'Weissella confusa')
microbiome/RPA documentation built on April 9, 2023, 10:59 a.m.
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View source: R/retrieve.probesets.hitchip.R
| retrieve.probesets | R Documentation |
Retrieve probesets
Description
List probes for each probeset in taxonomic data.
Usage
retrieve.probesets(tax.table, level = "species", name = NULL)
Arguments
tax.table |
data.frame with oligo - phylotype mapping info |
level |
phylotype level for probesets |
name |
specify phylotypes to check (optional) |
Value
A list. Probes for each phylotype.
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
Examples
#tax.table <- GetPhylogeny('HITChip')
#sets <- retrieve.probesets(tax.table, 'species', 'Weissella confusa')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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