rpa.plot: rpa.plot

In microbiome/RPA: RPA: Robust Probabilistic Averaging for probe-level analysis

rpa.plot

Description

Plot RPA results and probe-level data for a specified probeset.

Usage

rpa.plot(
  x,
  set,
  highlight.probes = NULL,
  pcol = "darkgrey",
  mucol = "black",
  ecol = "red",
  external.signal = NULL,
  main = NULL,
  plots = "all",
  ...
)

Arguments

x	Output from rpa.complete function
set	probeset
highlight.probes	mark probes for highlight
pcol	probe color
mucol	probeset signal color
ecol	external signal color
external.signal	external signal to be plotted on top
main	title
plots	plot type
...	other arguments to be passed

Details

Plots the preprocessed probe-level observations, estimated probeset-level signal, and probe-specific variances. It is also possible to highlight individual probes and external summary measures.

Value

Used for its side-effects. Returns probes x samples matrix of probe-level data plotted on the image.

Author(s)

Leo Lahti [e-mail]

References

See citation("RPA")

Examples

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microbiome/RPA documentation built on April 9, 2023, 10:59 a.m.