add_refseq: Add 'refseq' Slot for 'dada2' based 'phyloseq' Object
In microbiome/microbiome: Microbiome Analytics
add_refseq R Documentation
Add refseq Slot for dada2 based phyloseq Object
Description
Utility to add refseq slot for dada2 based
phyloseq Object. Here, the taxa_names which are unique
sequences, are stored in refseq slot of phyloseq.
Sequence ids are converted to ids using tag option.
Usage
add_refseq(x, tag = "ASV")
Arguments
x
phyloseq-class object with sequences as rownames.
tag
Provide name for Ids, Default="ASV".
Value
phyloseq-class object
Author(s)
Contact: Sudarshan A. Shetty sudarshanshetty9@gmail.com
Examples
# ps <- add_refseq(p0,tag="ASV")
# ps
microbiome/microbiome documentation built on Aug. 22, 2023, 7:12 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| add_refseq | R Documentation |
Add refseq Slot for dada2 based phyloseq Object
Description
Utility to add refseq slot for dada2 based
phyloseq Object. Here, the taxa_names which are unique
sequences, are stored in refseq slot of phyloseq.
Sequence ids are converted to ids using tag option.
Usage
add_refseq(x, tag = "ASV")
Arguments
x |
|
tag |
Provide name for Ids, Default="ASV". |
Value
phyloseq-class object
Author(s)
Contact: Sudarshan A. Shetty sudarshanshetty9@gmail.com
Examples
# ps <- add_refseq(p0,tag="ASV")
# ps
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.