densityplot: Density Plot

In microbiome/microbiome: Microbiome Analytics

Density Plot

Description

Density visualization for data points overlaid on cross-plot.

Usage

densityplot(
  x,
  main = NULL,
  x.ticks = 10,
  rounding = 0,
  add.points = TRUE,
  col = "black",
  adjust = 1,
  size = 1,
  legend = FALSE,
  shading = TRUE,
  shading.low = "white",
  shading.high = "black",
  point.opacity = 0.75
)

Arguments

x	Data matrix to plot. The first two columns will be visualized as a cross-plot.
main	title text
x.ticks	Number of ticks on the X axis
rounding	Rounding for X axis tick values
add.points	Plot the data points as well
col	Color of the data points. NAs are marked with darkgray.
adjust	Kernel width adjustment
size	point size
legend	plot legend TRUE/FALSE
shading	Shading
shading.low	Color for shading low density regions
shading.high	Color for shading high density regions
point.opacity	Transparency-level for points

Value

ggplot2 object

Author(s)

Contact: Leo Lahti [e-mail]

References

See citation('microbiome')

Examples

# p <- densityplot(cbind(rnorm(100), rnorm(100)))

microbiome/microbiome documentation built on Aug. 22, 2023, 7:12 a.m.