Man pages for mireia-bioinfo/meowmics
What the Package Does (One Line, Title Case)
| binGenome | Bin genome into windows |
| binPromoterAnnotation | Build binned promoter annotation for TSS enrichment |
| binRegions | Bin a set of GRanges regions |
| bin_regions_nbins | Bin regions using a fixed number of bins |
| dot-obtainOverlapMeasures | Obtain number of overlaps and width of the overlapping... |
| enrichmentTSS | Get TSS enrichment |
| get_conservation_scores | Get conservation scores |
| get_enhancer_clusters | Obtain enhancer clusters |
| getNameFromPath | Get name from path |
| get_overlaps_sign | Get significant overlaps |
| get_ranking_sharing_index | Get ranking and sharing indexes |
| interSiteDistances | Obtain distances between consecutive regions |
| jaccardScore | Calculate Jaccard Scores between a list of peaks |
| loadPhantomPeakQC | Load Phantom Peak Quality Control |
| mean_rm | Get mean removing NAs |
| obtainCodingGenes | Obtain protein coding genes |
| peakSaturation | Peak saturation with increasing number of samples |
| phantomPeakQC | Phantom Peak Quality Control |
| pipe | Pipe operator |
| plotPeakSaturation | Plot peak saturation |
| plot_ranking_sharing_index | Plot sharing index vs ranking index |
| ranking_index | Obtain ranking index |
| sharing_index | Obtain sharing index |
| signalToNoiseRatio | Signal-to-noise ratio |
| wholeGenomeCor | Whole-genome correlation between samples |
