peakSaturation: Peak saturation with increasing number of samples

In mireia-bioinfo/meowmics: What the Package Does (One Line, Title Case)

Peak saturation with increasing number of samples

Description

Peak saturation with increasing number of samples

Usage

peakSaturation(
  peakfiles,
  fc = NA,
  qval = NA,
  suffix = "_peaks.narrowPeak",
  cores = 8
)

Arguments

peakfiles	Character vector of peak file paths or list of GRanges object containing the peaks for each one of the different samples.
fc	Numeric indicating a fold-change value to filter out peaks (from column named "signalValue").
qval	Numeric indicating a q-value threshold to filter out peaks (from column named "qValue").
suffix	Suffix to remove from the file paths to create sample names.
cores	Number of threads to use for obtaining overlaps.

mireia-bioinfo/meowmics documentation built on July 29, 2023, 10 p.m.