wholeGenomeCor: Whole-genome correlation between samples

In mireia-bioinfo/meowmics: What the Package Does (One Line, Title Case)

Whole-genome correlation between samples

Description

Whole-genome correlation between samples

Usage

wholeGenomeCor(
  bam_files,
  chr_sizes,
  suffix = ".bam",
  bin_size = 10000,
  nthreads = 3,
  paired_end = FALSE
)

Arguments

bam_files	Character vector of bam file paths.
chr_sizes	Text files with the sizes for each chormosome, as obtain from
suffix	Suffix to remove from bam files to use as sample names. Default: ".bam".
nthreads	Number of cores to use for the analysis.
paired_end	Logical indicating whether the libraries are paired end or not. (Default: FALSE).

mireia-bioinfo/meowmics documentation built on July 29, 2023, 10 p.m.