enrichmentTSS: Get TSS enrichment

In mireia-bioinfo/meowmics: What the Package Does (One Line, Title Case)

Get TSS enrichment

Description

Get TSS enrichment

Usage

enrichmentTSS(
  bam_files,
  promoter_saf,
  suffix = ".bam",
  nthreads = 5,
  paired_end = FALSE
)

Arguments

bam_files	Character vector of BAM files to obtain enrichment.
promoter_saf	SAF promoter file generated with binPromoterAnnotation.
suffix	Suffix to remove from bam files to use as sample names. Default: ".bam".
nthreads	Number of cores to use for the analysis.
paired_end	Logical indicating whether the libraries are paired end or not. (Default: FALSE).

Value

Data.frame with the different promoter bins and the mean reads per sample

mireia-bioinfo/meowmics documentation built on July 29, 2023, 10 p.m.