mirnavazquez/RbiMs: R Tools for Reconstruncting Bin Metabolisms

This package is meant to be used for the analysis of microbial metabolism. rbims reads different database outputs and includes a new custom-curated database that the user can easily access. Its module-based design allows the user to choose between running the whole pipeline or just part of it. Finally, a key feature is that it facilitates the incorporation of metadata such as taxonomy and sampling data, allowing the user to answer specific questions of biological relevance.

Getting started

Package details

Bioconductor views KEGGREST
LicenseGPL (>= 3) + file LICENSE
URL https://github.com/mirnavazquez/RbiMs
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
mirnavazquez/RbiMs documentation built on April 15, 2022, 5:57 a.m.