get_subset_pathway: Subsets the mapped KO table based on pathways.

In mirnavazquez/RbiMs: R Tools for Reconstruncting Bin Metabolisms

Subsets the mapped KO table based on pathways.

Description

reads the output of the mapping_ko function to filter out KOs based on pathways.

Usage

get_subset_pathway(mapped_ko_table, type_of_interest_feature,
interest_feature)

Arguments

mapped_ko_table	a data frame object. The output table from the mapping_ko function.
type_of_interest_feature	is a mapped_ko column name. This feature is going to be used for subsetting.
interest_feature	a character vector of the mapped_ko feature of interest. It is found under the type_of_interest_feature value column.

Details

This function is part of a package used for the analysis of bins metabolism.

Examples

get_subset_pathway(mapped_ko_table=ko_bin_mapp, 
type_of_interest_feature=rbims_pathway, interest_feature="Hexadecane")

mirnavazquez/RbiMs documentation built on March 6, 2024, 10:27 p.m.