get_subset_pathway: Subsets the mapped KO table based on pathways.

View source: R/GET-get_subseting_pathway.R View source: R/GET-get_subset_pathway.R

get_subset_pathwayR Documentation

Subsets the mapped KO table based on pathways.

Description

reads the output of the mapping_ko function to filter out KOs based on pathways.

Usage

get_subset_pathway(mapped_ko_table, type_of_interest_feature,
interest_feature)

Arguments

mapped_ko_table

a data frame object. The output table from the mapping_ko function.

type_of_interest_feature

is a mapped_ko column name. This feature is going to be used for subsetting.

interest_feature

a character vector of the mapped_ko feature of interest. It is found under the type_of_interest_feature value column.

Details

This function is part of a package used for the analysis of bins metabolism.

Examples

get_subset_pathway(mapped_ko_table=ko_bin_mapp, 
type_of_interest_feature=rbims_pathway, interest_feature="Hexadecane")

mirnavazquez/RbiMs documentation built on Nov. 20, 2024, 1:16 a.m.