mapping_ko: Maps KOs to the KEGG database.

In mirnavazquez/RbiMs: R Tools for Reconstruncting Bin Metabolisms

Maps KOs to the KEGG database.

Description

Reads a table object created with the read_ko function and maps each KO to the KEGG database.

Usage

mapping_ko(tibble_ko=NULL, tibble_interpro=NULL)

Arguments

tibble_ko	a data frame object with four columns containing the KO abundance for each bin. Output of read_ko.
tibble_interpro	a data frame with three columns. The first column refers to contigs. They are expected to indicate in their names the bin name follow by the scaffold name divided by an "_": bin_scaffoldXX. The second column is the KEGG pathway to which such scaffold belong, and the third is the enzymes. Output of read_interpro.

Details

This function is part of a package used for the analysis of bins metabolism.

Examples

mapping_ko(ko_bin_table)

mirnavazquez/RbiMs documentation built on Nov. 20, 2024, 1:16 a.m.