View source: R/MAPPING-mapping_ko.R
mapping_ko | R Documentation |
Reads a table object created with the read_ko function and maps each KO to the KEGG database.
mapping_ko(tibble_ko=NULL, tibble_interpro=NULL)
tibble_ko |
a data frame object with four columns containing the KO abundance for each bin. Output of read_ko. |
tibble_interpro |
a data frame with three columns. The first column refers to contigs. They are expected to indicate in their names the bin name follow by the scaffold name divided by an "_": bin_scaffoldXX. The second column is the KEGG pathway to which such scaffold belong, and the third is the enzymes. Output of read_interpro. |
This function is part of a package used for the analysis of bins metabolism.
mapping_ko(ko_bin_table)
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