View source: R/GET-get_subset_pca.R View source: R/GET-get_pca.R
get_subset_pca | R Documentation |
Identifies the most important KO pathways or protein domains in the whole database. And print back a profile of the protein domains that have higher contributions.
get_subset_pca(tibble_rbims, cos2_val=NULL,
analysis=c("KEGG", "PFAM", "INTERPRO"))
tibble_rbims |
a tibble object, created with the read_interpro, mapping_ko or get_subset_* functions. |
cos2_val |
a numeric vector from 0 to 1 indicating the proportion of contribution used as cut off. Default is 0.98. See get_pca. |
analysis |
a character, indicating from which input do you want to get the abundance profile. Valid options are "KEGG", "PFAM" or "INTERPRO". |
This function is part of a package used for the analysis of bins metabolism.
get_subset_pca(ko_bin_mapp, analysis="KEGG")
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