read_picrust2: Read the output of PICRUSt2

In mirnavazquez/RbiMs: R Tools for Reconstruncting Bin Metabolisms

Read the output of PICRUSt2

Description

read a table created in PICRUSt2 and gives format to downstream analysis

Usage

read_picrust2(data_picrust2, profile=TRUE, write=FALSE, 
database= c("KO", "EC", "pathway"))

Arguments

data_picrust2	a table, output of PICRUSt2 on tsv format.
profile	a logical value indicating if you want to print a profile or not.
write	a logical value indicating to save the data imported as a formatted table with .tsv extension with a time stamp
database	a character indicating for which database do you want to get the abundance profile. Valid options are "KO", "EC" or "pathway".

Details

This function is part of a package used for the analysis of bins metabolism.

Examples

## Not run: 
read_picrust2(data_picrust2="inst/extdata/pred_metagenome_unstrat.tsv", 
database="KO", profile = F, write=F)

## End(Not run)

mirnavazquez/RbiMs documentation built on Nov. 20, 2024, 1:16 a.m.