calc_binary: Calculate presence/absence.

View source: R/CALC-calc_binary.R

calc_binaryR Documentation

Calculate presence/absence.

Description

Calculate the presence/absence of data in certain pathway.

Usage

calc_binary(tibble_ko, y_axis, data_experiment=NULL, binary=TRUE,
metabolism=FALSE)

Arguments

tibble_ko

a tibble object from mapping_ko.

y_axis

a character, indicating the pathway to analyze.

data_experiment

optional. a data frame object containing metadata information.

binary

optional. a logical value, indicating whether you want to calculate presence/absence or abundance of KOs per pathway.

metabolism

optional. a logical value, if TRUE it will show the metabolism table.

Details

This function is part of a package used for the analysis of bins metabolism.

Examples

calc_binary(ko_bin_mapp, Pathway)    

mirnavazquez/RbiMs documentation built on Sept. 6, 2024, 1:05 p.m.