calc_binary: Calculate presence/absence.

In mirnavazquez/RbiMs: R Tools for Reconstruncting Bin Metabolisms

Calculate presence/absence.

Description

Calculate the presence/absence of data in certain pathway.

Usage

calc_binary(tibble_ko, y_axis, data_experiment=NULL, binary=TRUE,
metabolism=FALSE)

Arguments

tibble_ko	a tibble object from mapping_ko.
y_axis	a character, indicating the pathway to analyze.
data_experiment	optional. a data frame object containing metadata information.
binary	optional. a logical value, indicating whether you want to calculate presence/absence or abundance of KOs per pathway.
metabolism	optional. a logical value, if TRUE it will show the metabolism table.

Details

This function is part of a package used for the analysis of bins metabolism.

Examples

calc_binary(ko_bin_mapp, Pathway)    

mirnavazquez/RbiMs documentation built on March 6, 2024, 10:27 p.m.