Files in mixOmicsTeam/mixOmics
Omics Data Integration Project

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CODE_OF_CONDUCT.md
DESCRIPTION
Dockerfile
NAMESPACE
NEWS.md R/LOGOCV.R R/MCV.block.splsda.R R/MCV.spls.R R/S3methods-plot.R R/S3methods-plot.perf.R R/S3methods-plot.perf.pls.R R/S3methods-plot.tune.R R/S3methods-print.R R/auroc.R R/background.predict.R R/bin.color.R R/biplot.R R/block.pls.R R/block.plsda.R R/block.spls.R R/block.splsda.R R/check_entry.R R/cim.R R/cimDiablo.R R/circosPlot.R R/colors.R R/data-Koren.16S.r R/data-breast.TCGA.r R/data-breast.tumors.r R/data-diverse.16S.r R/data-linnerud.r R/data-liver.toxicity.r R/data-multidrug.r R/data-nutrimouse.r R/data-srbct.r R/data-stemcells.r R/data-vac18.r R/data-vac18.simulated.r R/data-yeast.r R/explained_variance.R R/get.confusion_matrix.R R/helpers-plot.R R/ica.def.par.R R/image.tune.rcc.R R/imageMap.R R/imgCor.R R/impute.nipals.R R/internal_graphic.perf.R R/internal_graphicModule.R R/internal_mint.block.R R/internal_mint.block_helpers.R R/internal_predict.DA.R R/internal_wrapper.mint.R R/internal_wrapper.mint.block.R R/ipca.R R/logratio-transformations.R R/mint.block.pls.R R/mint.block.plsda.R R/mint.block.spls.R R/mint.block.splsda.R R/mint.pca.R R/mint.pls.R R/mint.plsda.R R/mint.spls.R R/mint.splsda.R R/mixOmics-package.R R/mixOmics.R R/network.R R/nipals.R R/pca.R R/pcasvd.R R/perf.R R/perf.assess.R R/perf.assess.diablo.R R/perf.assess.mint.plsda.R R/perf.assess.pls.R R/perf.assess.plsda.R R/perf.diablo.R R/perf.mint.splsda.R R/plotArrow.R R/plotDiablo.R R/plotIndiv.R R/plotIndiv.mint.R R/plotIndiv.pca.R R/plotIndiv.pls.R R/plotIndiv.sgcca.R R/plotLoadings.R R/plotLoadings.mint.pls.R R/plotLoadings.mint.plsda.R R/plotLoadings.pca.R R/plotLoadings.pls.R R/plotLoadings.plsda.R R/plotMarkers.R R/plotVar.R R/pls.R R/plsda.R R/predict.R R/rcc.R R/roc_utils.R R/selectVar.R R/sipca.R R/spca.R R/spls.R R/splsda.R R/summary.R R/t.test.process.R R/tune.R R/tune.block.plsda.R R/tune.block.splsda.R R/tune.mint.plsda.R R/tune.mint.splsda.R R/tune.pca.R R/tune.pls.R R/tune.plsda.R R/tune.rcc.R R/tune.spca.R R/tune.spls.R R/tune.spls1.R R/tune.splsda.R R/tune.splslevel.R R/unmap.R R/utils-argument_checkers.R R/utils.R R/vip.R R/withinVariation.R R/wrapper.rgcca.R R/wrapper.sgcca.R R/zz-defunct.R R/zzz.R README.md buildignore/devel/Q2-total.R buildignore/devel/merge-devel.R buildignore/devel/plot.perf-examples.R buildignore/devel/plot.perf.DA-examples.R buildignore/devel/plot.perf.pls-examples.R
codecov.yml
data/Koren.16S.rda
data/breast.TCGA.rda
data/breast.tumors.rda
data/datalist
data/diverse.16S.rda
data/linnerud.rda
data/liver.toxicity.rda
data/multidrug.rda
data/nutrimouse.rda
data/srbct.rda
data/stemcells.rda
data/vac18.rda
data/vac18.simulated.rda
data/yeast.rda
examples/auroc-examples.R examples/background.predict-examples.R examples/biplot-examples.R examples/block.pls-examples.R examples/block.plsda-examples.R examples/block.spls-examples.R examples/block.splsda-examples.R examples/cim-examples.R examples/cimDiablo-examples.R examples/circosPlot-examples.R examples/ipca-examples.R examples/mixOmics-examples.R examples/network-examples.R examples/pca-examples.R examples/perf-examples.R examples/perf.assess-examples.R examples/perf.pls-examples.R examples/plot.tune-examples.R examples/plotArrow-examples.R examples/plotIndiv-examples.R examples/plotLoadings-examples.R examples/plotVar-examples.R examples/plsda-examples.R examples/predict-examples.R examples/print-examples.R examples/selectVar-examples.R examples/sipca-examples.R examples/spca-examples.R examples/spls-examples.R examples/splsda-examples.R examples/tune-examples.R examples/tune.block.plsda-examples.R examples/tune.block.splsda-examples.R examples/tune.mint.plsda-examples.R examples/tune.mint.splsda-examples.R examples/tune.pca-examples.R examples/tune.pls-examples.R examples/tune.plsda-examples.R examples/tune.rcc-examples.R examples/tune.spca-examples.R examples/tune.spls-examples.R examples/tune.splsda-examples.R
inst/CITATION
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tests/testthat/_snaps/plotLoadings.sgccda/loadings-plot-diablo-block-specific-with-contrib-graphics.svg
tests/testthat/_snaps/plotLoadings.sgccda/loadings-plot-diablo-change-labels-and-label-sizes-ggplot2.svg
tests/testthat/_snaps/plotLoadings.sgccda/loadings-plot-diablo-change-labels-and-label-sizes-graphics.svg
tests/testthat/_snaps/plotLoadings.sgccda/loadings-plot-diablo-change-legend-ggplot2.svg
tests/testthat/_snaps/plotLoadings.sgccda/loadings-plot-diablo-change-legend-graphics.svg
tests/testthat/_snaps/plotLoadings.sgccda/loadings-plot-diablo-simple-ggplot2.svg
tests/testthat/_snaps/plotLoadings.sgccda/loadings-plot-diablo-simple-graphics.svg
tests/testthat/helpers.R tests/testthat/test-auroc.R tests/testthat/test-background.predict.R tests/testthat/test-biplot.R tests/testthat/test-cim.R tests/testthat/test-circsPlot.R tests/testthat/test-diabolo.R tests/testthat/test-general.DA.R tests/testthat/test-impute.nipals.R tests/testthat/test-internals-.get.pch.R tests/testthat/test-internals.R tests/testthat/test-ipca.R tests/testthat/test-mint.block.pls.R tests/testthat/test-mint.block.spls.R tests/testthat/test-mint.block.splsda.R tests/testthat/test-network.R tests/testthat/test-pca.R tests/testthat/test-pcasvd.R tests/testthat/test-perf.and.perf.assess.diablo.R tests/testthat/test-perf.and.perf.assess.mint.plsda.R tests/testthat/test-perf.and.perf.assess.mixo.plsR.R tests/testthat/test-perf.and.perf.assess.mixo.plsda.R tests/testthat/test-plotArrow.R tests/testthat/test-plotIndiv.R tests/testthat/test-plotIndiv.mint.R tests/testthat/test-plotIndiv.pca.R tests/testthat/test-plotIndiv.pls.R tests/testthat/test-plotIndiv.sgcca.R tests/testthat/test-plotLoadings.R tests/testthat/test-plotLoadings.mint.pls.R tests/testthat/test-plotLoadings.mint.plsda.R tests/testthat/test-plotLoadings.pca.R tests/testthat/test-plotLoadings.pls.R tests/testthat/test-plotLoadings.plsda.R tests/testthat/test-plotLoadings.sgccda.R tests/testthat/test-plotVar.R tests/testthat/test-predict.R tests/testthat/test-sipca.R tests/testthat/test-tune.block.plsda.R tests/testthat/test-tune.block.splsda.R tests/testthat/test-tune.mint.plsda.R tests/testthat/test-tune.mint.splsda.R tests/testthat/test-tune.pca.R tests/testthat/test-tune.pls.R tests/testthat/test-tune.plsda.R tests/testthat/test-tune.rcc.R tests/testthat/test-tune.spca.R tests/testthat/test-tune.spls.R tests/testthat/test-tune.splsda.R tests/testthat/test-tune.splslevel.R tests/testthat/test-verbose.call.R tests/testthat/test-wrapper.rgcca.R
vignettes/InputFigures/Methods.png
vignettes/InputFigures/MixOmicsAnalysesV2.png
vignettes/InputFigures/cheatsheet.png
vignettes/InputFigures/framework-mixOmics-June2016.jpg
vignettes/InputFigures/logo-mixomics.jpg
vignettes/InputFigures/logo-mixomics.png
vignettes/InputFigures/logo.jpeg
vignettes/bibliography.bib
vignettes/header.html
vignettes/vignette.Rmd
mixOmicsTeam/mixOmics documentation built on April 13, 2025, 11:59 p.m.