Files in mkarikom/RSoptSC
Low-Rank Factorization for Subspace-clustering
..Rcheck/00check.log
.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/Clustering.R
R/DataSelection.R
R/FindRootCell.R
R/FindRootCluster.R
R/JoinGraphComponents.R
R/LoadData.R
R/MarkerGenes.R
R/PlottingFunctions.R
R/RepresentationMap.R
R/Signaling.R
R/SimilarityM.R
R/TreeFunctions.R
R/sysdata.rda
README.Rmd
README.md
docs/404.html
docs/LICENSE-text.html
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docs/reference/AvgFeatureExpression.html
docs/reference/ChordColors.html
docs/reference/ClusterAvg.html
docs/reference/ClusterCells.html
docs/reference/ClusterSig.html
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docs/reference/ColorHue.html
docs/reference/CountClusters.html
docs/reference/FeatureScatterPlot.html
docs/reference/FindRootCell.html
docs/reference/FindRootCluster.html
docs/reference/GSE67602_Joost.html
docs/reference/GetCellMetric.html
docs/reference/GetComponents.html
docs/reference/GetConsensus.html
docs/reference/GetCorrelation.html
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docs/reference/GetDominatorTree.html
docs/reference/GetEnsemble.html
docs/reference/GetMarkerTable.html
docs/reference/GetPredecessors.html
docs/reference/GetSignalingPartners.html
docs/reference/ImportPathway.html
docs/reference/JoinGraphComponents.html
docs/reference/LoadData.html
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docs/reference/MembershipList.html
docs/reference/NormalizeGene.html
docs/reference/NormalizeSubset.html
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docs/reference/RepresentationMap.html
docs/reference/ScaleCenterData.html
docs/reference/SelectData.html
docs/reference/SigPlot.html
docs/reference/SigPlot_Cluster.html
docs/reference/SimilarityM.html
docs/reference/SimpleCap.html
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docs/reference/ViolinPlotExpression.html
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docs/reference/getAlpha.html
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docs/reference/index.html
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inst/extdata/GSE67602_JoostAnnotation.csv
inst/extdata/GSE67602_JoostAnnotation.csv.bz2
inst/extdata/GSE67602_JoostCells.csv
inst/extdata/GSE67602_JoostCells.csv.bz2
inst/extdata/GSE67602_JoostData.csv.bz2
inst/extdata/GSE67602_JoostGenes.csv.bz2
inst/extdata/test_gene_expression.txt
inst/extdata/test_ligrec.txt
inst/extdata/test_rectarg_updown.txt
inst/extdata/tgfb_lig_rec.tsv
inst/extdata/tgfb_rec_target.tsv
inst/extdata/tgfb_rec_target_both.tsv
inst/extdata/tgfb_rec_target_down.tsv
inst/extdata/tgfb_rec_target_up.tsv
man/ApplyCountThreshold.Rd
man/AvgFeatureExpression.Rd
man/ClusterAvg.Rd
man/ClusterCells.Rd
man/ClusterSig.Rd
man/ClusterSig_single.Rd
man/ColorHue.Rd
man/CountClusters.Rd
man/FeatureScatterPlot.Rd
man/FindRootCell.Rd
man/FindRootCluster.Rd
man/GetCellMetric.Rd
man/GetComponents.Rd
man/GetConsensus.Rd
man/GetCorrelation.Rd
man/GetDGFromTable.Rd
man/GetDominatorTree.Rd
man/GetEnsemble.Rd
man/GetMarkerTable.Rd
man/GetPredecessors.Rd
man/GetSignalingPartners.Rd
man/ImportPathway.Rd
man/JoinGraphComponents.Rd
man/LoadData.Rd
man/LogNormalize.Rd
man/MembershipList.Rd
man/PlotClusterExpression.Rd
man/PlotLineage.Rd
man/PlotMatlabDtree.Rd
man/PlotTopN.Rd
man/PlotTopN_Grid.Rd
man/ProcessMatlabDTree.Rd
man/RepresentationMap.Rd
man/ScaleCenterData.Rd
man/SelectData.Rd
man/SigPlot.Rd
man/SigPlot_Cluster.Rd
man/SimilarityM.Rd
man/SimpleCap.Rd
man/ViolinPlotExpression.Rd
man/computeM.Rd
man/figures/logo.svg
man/getAlpha.Rd
man/getBetaj.Rd
man/getGammaj.Rd
man/updateFlatBoth.Rd
man/updateFlatDown.Rd
man/updateFlatNone.Rd
man/updateFlatUp.Rd
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tests/testthat.R
tests/testthat/testClusterNumber.R
tests/testthat/testL2R2.R
tests/testthat/testPtime.R
tests/testthat/testSignal.R
vignettes/RSoptSC.Rmd
