PlotTopN_Grid: Factor Grid heatmap of the top n markers

In mkarikom/RSoptSC: Low-Rank Factorization for Subspace-clustering

Factor Grid heatmap of the top n markers

Description

Plot the heatmap of the top n inferred markers for each cluster.

Usage

PlotTopN_Grid(
  data,
  cluster_labels,
  markers,
  n_features,
  y_lsize = ((length(unique(cluster_labels)) * n_features)/120) * 5,
  y_tsize = ((length(unique(cluster_labels)) * n_features)/120) * 15,
  x_lsize = ((length(unique(cluster_labels)) * n_features)/120) * 14,
  x_tsize = ((length(unique(cluster_labels)) * n_features)/120) * 15,
  use_z = TRUE,
  spacing = 0.1
)

Arguments

data	expression data with genes x cells
cluster_labels	a vector of cluster labels corresponding to the columns in the data matrix
markers	a table of markers
n_features	the top n features to plot
y_lsize	y axis label size
y_tsize	y axis title size
x_lsize	x axis label size
x_tsize	x axis title size
use_z	use z-score per gene instead of raw expression
spacing	the number of lines between grids

Value

as heatmap

mkarikom/RSoptSC documentation built on May 10, 2023, 1:10 a.m.