ClusterAvg: Create a heatmap with signaling markers over clusters

In mkarikom/RSoptSC: Low-Rank Factorization for Subspace-clustering

Create a heatmap with signaling markers over clusters

Description

Create a heatmap with signaling markers over clusters.

Usage

ClusterAvg(M, gene_names, cell_order, cell_labels, gene_list)

Arguments

M	a matrix of genes x cells where each entry is normalized expression
gene_names	the names of the genes in the rows of M
cell_order	permutation of the labels of P, cells ordered by cluster
cell_labels	cluster labels of the permuted cells
gene_list	filter by a list of gene names

Value

a matrix of avg expression values

mkarikom/RSoptSC documentation built on May 10, 2023, 1:10 a.m.