PlotLineage: Plot the pseudotime ordering of clusters

In mkarikom/RSoptSC: Low-Rank Factorization for Subspace-clustering

Plot the pseudotime ordering of clusters

Description

Plot the pseudotime ordering of clusters using igraph tools.

Usage

PlotLineage(
  network,
  node_color = NULL,
  alpha_color = 1,
  exaggerate = TRUE,
  weight_scaler = 0.2,
  arrow_scaler = 0.8
)

Arguments

network	an igraph network with weighted edges corresponding to the pseudotime distance
node_color	an optional vector of colors for node labeling. If null then the nodes are all colored black
alpha_color	the gradient of the nodes
exaggerate	whether to exponentiate then linearly scale the edge weights, thus emphasizing their differences
weight_scaler	the weight scaler for edges
arrow_scaler	the arrow width scaler for edges

Value

nothing

mkarikom/RSoptSC documentation built on May 10, 2023, 1:10 a.m.