Files in mmkhan19/singleCellTK

Interactive Analysis of Single Cell RNA-Seq Data

R/AllClasses.R R/AllGenerics.R R/ComBatSCE.R R/DownsampleMatrix.R R/GSVA.R R/MAST.R R/MASTPlotFunctions.R R/alignSingleCellData.R R/convertGeneIDs.R R/data.R R/enrichRSCE.R R/getBiomarker.R R/getClusterInputData.R R/getPCA.R R/getTSNE.R R/getUMAP.R R/getset.R R/miscFunctions.R R/plotBatchVariance.R R/plotBiomarker.R R/plotDimRed.R R/plotPCA.R R/plotTSNE.R R/plotUMAP.R R/saveBiomarkerRes.R R/saveDiffExResults.R R/scDiffEx.R R/singleCellTK.R R/visPlot.R README.md inst/shiny/colourGroupInput.R inst/shiny/helpers.R inst/shiny/server.R inst/shiny/ui.R inst/shiny/ui_01_upload.R inst/shiny/ui_02_filter.R inst/shiny/ui_03_1_genewise_vis.R inst/shiny/ui_03_2_samplewise_vis.R inst/shiny/ui_03_3_celda.R inst/shiny/ui_03_cluster.R inst/shiny/ui_04_batchcorrect.R inst/shiny/ui_05_1_diffex.R inst/shiny/ui_05_2_mast.R inst/shiny/ui_06_1_pathway.R inst/shiny/ui_06_2_enrichR.R inst/shiny/ui_06_3_hypeR.R inst/shiny/ui_07_subsample.R man/ComBatSCE.Rd man/DownsampleCells.Rd man/DownsampleDepth.Rd man/MAST.Rd man/SCtkExperiment-class.Rd man/SCtkExperiment.Rd man/alignSingleCellData.Rd man/calcEffectSizes.Rd man/campbellBrainSubset.Rd man/convertGeneIDs.Rd man/createSCE.Rd man/distinctColors.Rd man/enrichRSCE.Rd man/filterSCData.Rd man/generateSimulatedData.Rd man/getBiomarker.Rd man/getClusterInputData.Rd man/getPCA.Rd man/getTSNE.Rd man/getUMAP.Rd man/gsvaSCE.Rd man/iterateSimulations.Rd man/mouseBrainSubsetSCE.Rd man/parseRsubreadLogs.Rd man/pcaVariances-set.Rd man/pcaVariances.Rd man/plotBatchVariance.Rd man/plotBiomarker.Rd man/plotDiffEx.Rd man/plotDimRed.Rd man/plotPCA.Rd man/plotTSNE.Rd man/plotUMAP.Rd man/saveBiomarkerRes.Rd man/saveDiffExResults.Rd man/scDiffEx.Rd man/singleCellTK.Rd man/subDiffEx.Rd man/summarizeTable.Rd man/visPlot.Rd tests/spelling.R tests/testthat.R tests/testthat/test-misc.R vignettes/v01-Introduction_to_singleCellTK.Rmd vignettes/v02-Processing_and_Visualizing_Data_in_the_SingleCellTK.Rmd