R/data.R

In mmkhan19/singleCellTK: Interactive Analysis of Single Cell RNA-Seq Data

#' Example Single Cell RNA-Seq data in SCtkExperiment Object, GSE60361
#' subset
#'
#' A subset of 30 cells from a single cell RNA-Seq experiment from Zeisel, et
#' al. Science 2015. The data was produced from cells from the mouse
#' somatosensory cortex (S1) and hippocampus (CA1). 15 of the cells were
#' identified as oligodendrocytes and 15 of the cell were identified as
#' microglia.
#'
#' @name mouseBrainSubsetSCE
#' @docType data
#' @format SCtkExperiment
#' @source DOI: 10.1126/science.aaa1934
#' @keywords datasets
#' @examples
#' data("mouseBrainSubsetSCE")
"mouseBrainSubsetSCE"

#' Example Single Cell RNA-Seq data in SCtkExperiment Object, Campbell, et al.
#' subset
#'
#' A subset of 500 cells from a single cell RNA-Seq experiment from Campbell, et
#' al. Nat. Neuroscience 2017. This contains information such as the diet of the mice, 
#' sex and proposed cell type for each cell.
#'
#' @name campbellBrainSubset
#' @docType data
#' @format SCtkExperiment
#' @source DOI: 10.1038/nn.4495
#' @keywords datasets
#' @examples
#' data("campBrainSubsetSCE")
"campbellBrainSubset"