drug_target_interaction_example: Drug target interaction example data
In molnet-org/molnet: Predicting Differential Drug Response using Multi-Omics Networks
Description
Usage
Format
Source
Description
Drug target interaction example data
Usage
1
Format
A named list with 3 items.
- target_molecules
Name of layer containing the drug targets. This name has to match the
corresponding named item in the list of layers supplied to start_pipeline.
- interaction_table
Table giving drug-gene-interactions.
- gene_name
Gene names of targeted protein-coding genes.
- ncbi_id
NCBI IDs of targeted protein-coding genes.
- drug_name
Drug-names with known interactions.
- drug_chembl_id
ChEMBL ID of drugs.
- match_on
Column name of the data frame supplied in 'interaction_table' that is used for
matching drugs and target nodes in the graph (e.g. 'ncbi_id').
Source
Terunuma, Atsushi et al. “MYC-driven accumulation of 2-hydroxyglutarate is associated
with breast cancer prognosis.”
The Journal of clinical investigation vol. 124,1 (2014): 398-412. doi:10.1172/JCI71180
Pubchem IDs: https://pubchem.ncbi.nlm.nih.gov
MetaboAnalyst: https://www.metaboanalyst.ca/faces/upload/ConvertView.xhtml
molnet-org/molnet documentation built on Dec. 21, 2021, 8:59 p.m.
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Description Usage Format Source
Description
Drug target interaction example data
Usage
1 |
Format
A named list with 3 items.
- target_molecules
Name of layer containing the drug targets. This name has to match the corresponding named item in the list of layers supplied to
start_pipeline.- interaction_table
Table giving drug-gene-interactions.
- gene_name
Gene names of targeted protein-coding genes.
- ncbi_id
NCBI IDs of targeted protein-coding genes.
- drug_name
Drug-names with known interactions.
- drug_chembl_id
ChEMBL ID of drugs.
- match_on
Column name of the data frame supplied in 'interaction_table' that is used for matching drugs and target nodes in the graph (e.g. 'ncbi_id').
Source
Terunuma, Atsushi et al. “MYC-driven accumulation of 2-hydroxyglutarate is associated with breast cancer prognosis.” The Journal of clinical investigation vol. 124,1 (2014): 398-412. doi:10.1172/JCI71180
Pubchem IDs: https://pubchem.ncbi.nlm.nih.gov
MetaboAnalyst: https://www.metaboanalyst.ca/faces/upload/ConvertView.xhtml
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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