phosphoprotein_data: Phosphosite data

In molnet-org/molnet: Predicting Differential Drug Response using Multi-Omics Networks

Description

Phosphosite analysis of breast cancer patients data from Krug et al., 2020 (data from the Clinical Proteomic Tumor Analysis Consortium (CPTAC)). The data is stratified by estrogen receptor (ER) expression status (group1 = ER+, group2 = ER-). Each group is given as a sub-list containing 'data' (raw data, phosphosites in columns and samples in rows) and 'identifiers' (one column per identifier, rows in the same order as the phosphosite order in 'data').

Usage

phosphoprotein_data

Format

group1

ER+ data

data

raw data, phosphosites in columns and samples in rows

identifiers

one column per identifier, rows in the same order as the phoshosite order in 'data', identifiers: Phosphosite ID, RefSeq ID, gene name

group2

ER- data

data

see above

identifiers

see above

Source

Krug, Karsten et al. “Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy.” Cell vol. 183,5 (2020): 1436-1456.e31. doi:10.1016/j.cell.2020.10.036

molnet-org/molnet documentation built on Dec. 21, 2021, 8:59 p.m.