individual_graphs_example: Individual graphs
In molnet-org/molnet: Predicting Differential Drug Response using Multi-Omics Networks
Description
Usage
Format
Source
Description
Exemplary intermediate pipeline output: Individual graphs example data built by
generate_individual_graphs. Graphs were created by correlation computation and
reduced by the 'p_value' reduction method (default settings of molnet_settings. A
subset of the original data by Krug et al., 2020 and randomly sampled metabolite data
(layers_example) was used to generate graphs. They were created from data
tratified by estrogen receptor (ER) status: group1 contains data of ER+ patients and group2 of
ER- patients.
Usage
1
Format
A named list with 2 items.
- graphs
A named list with two groups.
- group1
Graphs associated with group1
- mrna
- protein
- phosphoprotein
- metabolite
- group2
same structure as above
- annotations
A named list containing data frames of mappings of assigned node IDs to the
user-provided component identifiers for nodes in group1 or group2 and all nodes
- group1
- group2
- all
Source
Krug, Karsten et al. “Proteogenomic Landscape of Breast Cancer Tumorigenesis and
Targeted Therapy.” Cell vol. 183,5 (2020): 1436-1456.e31. doi:10.1016/j.cell.2020.10.036
molnet-org/molnet documentation built on Dec. 21, 2021, 8:59 p.m.
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Description Usage Format Source
Description
Exemplary intermediate pipeline output: Individual graphs example data built by
generate_individual_graphs. Graphs were created by correlation computation and
reduced by the 'p_value' reduction method (default settings of molnet_settings. A
subset of the original data by Krug et al., 2020 and randomly sampled metabolite data
(layers_example) was used to generate graphs. They were created from data
tratified by estrogen receptor (ER) status: group1 contains data of ER+ patients and group2 of
ER- patients.
Usage
1 |
Format
A named list with 2 items.
- graphs
A named list with two groups.
- group1
Graphs associated with group1
- mrna
- protein
- phosphoprotein
- metabolite
- group2
same structure as above
- annotations
A named list containing data frames of mappings of assigned node IDs to the user-provided component identifiers for nodes in group1 or group2 and all nodes
- group1
- group2
- all
Source
Krug, Karsten et al. “Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy.” Cell vol. 183,5 (2020): 1436-1456.e31. doi:10.1016/j.cell.2020.10.036
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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