ENV_STRING: Default shell command
In mskilab/Flow: Workflow and task management for genomics pipelines.
ENV_STRING R Documentation
Default shell command
Description
Shell command that executes the script
Usage
ENV_STRING
Format
An object of class character of length 1.
Details
This is an added command that will enforce the flow command to run from a clean slate.
I.e. no environmental variables inherited from submitted user profile. This ensures,
whether running locally or on slurm, that any environment variables get inherited from user's
bash profile.
mskilab/Flow documentation built on June 15, 2025, 2:48 p.m.
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| ENV_STRING | R Documentation |
Default shell command
Description
Shell command that executes the script
Usage
ENV_STRING
Format
An object of class character of length 1.
Details
This is an added command that will enforce the flow command to run from a clean slate. I.e. no environmental variables inherited from submitted user profile. This ensures, whether running locally or on slurm, that any environment variables get inherited from user's bash profile.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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