Module-class: Module class

In mskilab/Flow: Workflow and task management for genomics pipelines.

Module class

Description

Class Module defines an unconfigured module that is scraped from a "module" or "hydrant.deploy" file.

Slots

name

character name of module (by default the name of the module directory)

sourcedir

character path of firehose module directory containing code and hydrant.deploy file

args

vector of argument names that need to be populated for this module to be configured into a task

cmd

formatted string to be populated by args at time of instantiation of this module into Job

stamp

version stamp of this module

Author(s)

Marcin Imielinski

mskilab/Flow documentation built on Jan. 12, 2023, 8:31 a.m.