Files in mskilab/Flow
Workflow and task management for genomics pipelines.
.github/workflows/check-release.yaml
.gitignore
DESCRIPTION
NAMESPACE
R/Flow.R
R/utils.R
README.md
inst/extdata/Flow_schema.png
inst/extdata/dummy.task
inst/extdata/entities.txt
man/Flow-class.Rd
man/Flow.Rd
man/FlowAnnotation-class.Rd
man/FlowAnnotation.Rd
man/FlowLiteral-class.Rd
man/FlowLiteral.Rd
man/FlowOutput-class.Rd
man/FlowOutput.Rd
man/Job-class.Rd
man/Job.Rd
man/Module-class.Rd
man/Slurmize.Rd
man/Task-class.Rd
man/as.character.Rd
man/bcmd.Rd
man/bjobs.Rd
man/bkill.Rd
man/brun.Rd
man/bsub_cmd.Rd
man/c.Rd
man/cache.Rd
man/chmod.Rd
man/cmd.Rd
man/cores-set.Rd
man/cores.Rd
man/dedup.Rd
man/dirs.Rd
man/entities.Rd
man/err.Rd
man/file.dir.Rd
man/file.name.Rd
man/gres-set.Rd
man/gres.Rd
man/ids.Rd
man/inputs.Rd
man/io_c-set.Rd
man/io_c.Rd
man/io_n-set.Rd
man/io_n.Rd
man/jname.Rd
man/key.Rd
man/length.Rd
man/mem-set.Rd
man/mem.Rd
man/module-task.Rd
man/module.Rd
man/more.Rd
man/nice_val-set.Rd
man/nice_val.Rd
man/normalizePath.Rd
man/now-set.Rd
man/now.Rd
man/out.Rd
man/outdir.Rd
man/outputs.Rd
man/parse.info.Rd
man/plot.Flow.Rd
man/purge.Rd
man/qcmd.Rd
man/qjobs.Rd
man/qkill.Rd
man/qos-set.Rd
man/qprior-set.Rd
man/qprior.Rd
man/qrun.Rd
man/qsub_cmd.Rd
man/queue-set.Rd
man/queue.Rd
man/refresh.Rd
man/report.Rd
man/reset.job.Rd
man/rrbind.Rd
man/run.Rd
man/scmd.Rd
man/setwd.Rd
man/silent.Rd
man/sjobs.Rd
man/skill.Rd
man/sniff.Rd
man/srun.Rd
man/ssub_cmd.Rd
man/status.Rd
man/status.info.Rd
man/sub-.Flow.Rd
man/sub.Rd
man/tailf.Rd
man/task.Rd
man/tasks.Rd
man/time-set.Rd
man/time.Rd
man/update.Rd
man/viewtask.Rd
man/xml2task.Rd
old.travis.yml
tests/DESCRIPTION
tests/Flow_schema.png
tests/JaBbA/ab.force.rds
tests/JaBbA/edge.nudge.rds
tests/JaBbA/jabba.adj.txt
tests/JaBbA/jabba.cnv.vcf
tests/JaBbA/jabba.gg.rds
tests/JaBbA/jabba.png
tests/JaBbA/jabba.raw.rds
tests/JaBbA/jabba.rds
tests/JaBbA/jabba.seg.rds
tests/JaBbA/jabba.seg.txt
tests/JaBbA/jabba.simple.cnv.vcf
tests/JaBbA/jabba.simple.gg.rds
tests/JaBbA/jabba.simple.png
tests/JaBbA/jabba.simple.rds
tests/JaBbA/jabba.simple.vcf
tests/JaBbA/jabba.vcf
tests/JaBbA/junctions.rds
tests/JaBbA/junctions.txt
tests/JaBbA/karyograph.rds
tests/JaBbA/karyograph.rds.inputdata.png
tests/JaBbA/karyograph.rds.ppfit.png
tests/JaBbA/karyograph.rds.ppgrid.pdf
tests/JaBbA/karyograph.rds.ppgrid.solutions.rds
tests/JaBbA/seg.rds
tests/NAMESPACE
tests/R/Flow.R
tests/R/Flow.R~
tests/R/Flow.txt
tests/R/utils.R
tests/README.md
tests/inst/extdata/dummy.task
tests/inst/extdata/entities.txt
tests/man/Flow-class.Rd
tests/man/Flow.Rd
tests/man/FlowAnnotation-class.Rd
tests/man/FlowAnnotation.Rd
tests/man/FlowLiteral-class.Rd
tests/man/FlowLiteral.Rd
tests/man/FlowOutput-class.Rd
tests/man/FlowOutput.Rd
tests/man/Job-class.Rd
tests/man/Job.Rd
tests/man/Module-class.Rd
tests/man/Slurmize.Rd
tests/man/Task-class.Rd
tests/man/as.character.Rd
tests/man/bcmd.Rd
tests/man/bjobs.Rd
tests/man/bkill.Rd
tests/man/brun.Rd
tests/man/bsub_cmd.Rd
tests/man/c.Rd
tests/man/cache.Rd
tests/man/chmod.Rd
tests/man/cmd.Rd
tests/man/cores-set.Rd
tests/man/cores.Rd
tests/man/dedup.Rd
tests/man/dirs.Rd
tests/man/entities.Rd
tests/man/err.Rd
tests/man/file.dir.Rd
tests/man/file.name.Rd
tests/man/ids.Rd
tests/man/inputs.Rd
tests/man/io_c-set.Rd
tests/man/io_c.Rd
tests/man/io_n-set.Rd
tests/man/io_n.Rd
tests/man/jname.Rd
tests/man/key.Rd
tests/man/length.Rd
tests/man/mem-set.Rd
tests/man/mem.Rd
tests/man/module-task.Rd
tests/man/module.Rd
tests/man/more.Rd
tests/man/now-set.Rd
tests/man/now.Rd
tests/man/out.Rd
tests/man/outdir.Rd
tests/man/outputs.Rd
tests/man/parse.info.Rd
tests/man/plot.Flow.Rd
tests/man/purge.Rd
tests/man/qcmd.Rd
tests/man/qjobs.Rd
tests/man/qkill.Rd
tests/man/qprior-set.Rd
tests/man/qprior.Rd
tests/man/qrun.Rd
tests/man/qsub_cmd.Rd
tests/man/queue-set.Rd
tests/man/queue.Rd
tests/man/refresh.Rd
tests/man/report.Rd
tests/man/reset.job.Rd
tests/man/rrbind.Rd
tests/man/run.Rd
tests/man/scmd.Rd
tests/man/silent.Rd
tests/man/sjobs.Rd
tests/man/skill.Rd
tests/man/srun.Rd
tests/man/ssub_cmd.Rd
tests/man/status.Rd
tests/man/status.info.Rd
tests/man/sub-.Flow.Rd
tests/man/sub.Rd
tests/man/tailf.Rd
tests/man/task.Rd
tests/man/tasks.Rd
tests/man/time-set.Rd
tests/man/time.Rd
tests/man/update.Rd
tests/man/xml2task.Rd
tests/master
tests/testthat.R
tests/testthat/test_FlowOps.R
tests/testthat/test_utils.R
