xml2task: Makes a best attempt to convert a firehose xml task...

In mskilab/Flow: Workflow and task management for genomics pipelines.

Makes a best attempt to convert a firehose xml task configuration into a Task object or .task file

Description

Takes a path to an xml file of a FH task configuration, module path, and outputs a Task object or writes to a .task fil.e

Takes a path to an xml file of a FH task configuration, module path, and outputs a Task object or writes to a .task file

Usage

xml2task(path, module = NULL, out.file = NULL)

xml2task(path, module = NULL, out.file = NULL)

Arguments

path	string of pathname to firehose xml task
module	string name of Module (default = NULL)
out.file	string pathname to *.task file (default = NULL)

Author(s)

Marcin Imielinski

mskilab/Flow documentation built on Jan. 12, 2023, 8:31 a.m.