Flow-class: Class representing a collection of tasks

In mskilab/Flow: Workflow and task management for genomics pipelines.

Class representing a collection of tasks

Description

S4 class for Flow

A Flow is just a set of tasks / jobs applied to a set of entities. This class is currently only for monitoring progress / visualization of completeness, i.e. via a pie-network.

The taskdir is a directory which has .task objects, which are scraped via Task instantiator.

Slots

nodes

data.table of nodes which are either annotations or Task objects

edges

data.table of edges which are connect (input) annotations to Task objects or Task objects to output annotations

entities

keyed data.table of entities to which tasks are (optionally) applied to

Author(s)

Marcin Imielinski

mskilab/Flow documentation built on Jan. 12, 2023, 8:31 a.m.