Task-class: S4 class for 'Task'
In mskilab/Flow: Workflow and task management for genomics pipelines.

Task-class

R Documentation

S4 class for `Task`

Description

Class Task defines an task configuration object that is built from a firehose module with a hydrant.deploy file, and can be run locally or on the farm on annotations provided in a data.table

Slots

name: scalar character task name
module: Module object
libdir: scalar character directory to the FH libdir (by default is the module directory)
outdir: scalar character corresponding to name of out directory
mem: numeric scalar specifying default maximum memory in G to allocate to this task when runnin on farm
args: list of arguments, each is either an FlowLiteral or FlowAnnotation this specifies how the Task will be instantiated into an Job when combined with a data.table, can also be a character in which is interpreted as an annotation name by default
outputs: list of FlowOutput objects
stamp: timestamp of this task configuration instantiation