update: updates Job status This method checks inputs for updates to...

In mskilab/Flow: Workflow and task management for genomics pipelines.

updates Job status This method checks inputs for updates to input files, polls output directories for the presence output files, checks stdout output logs, among other things to assess job status. Once finished, it caches results to the .rds object associated with this Job.

Description

updates Job status

This method checks inputs for updates to input files, polls output directories for the presence output files, checks stdout output logs, among other things to assess job status. Once finished, it caches results to the .rds object associated with this Job.

Usage

## S4 method for signature 'Job'
update(
  object,
  check.inputs = TRUE,
  check.stamps = FALSE,
  mc.cores = 1,
  cache.object = TRUE,
  print.status = TRUE,
  parse_recursive = FALSE,
  io_c = 2,
  io_n = 4,
  qprior = 0
)

Author(s)

Marcin Imielinski

mskilab/Flow documentation built on Dec. 12, 2024, 4:25 p.m.