API for mskilab/gGnome
gGnome: reference based assembly graph for analyzing rearranged genomes
| Global functions | |
|---|---|
| %K% | Man page |
| .valid_add_table | Source code |
| .valid_json_db | Source code |
| ==.gGraph | Man page |
| Junction | Man page Man page |
| Junction class constructor | Man page |
| Junction.over | Man page |
| Junction.subset | Man page |
| Rcplex2 | Man page Source code |
| [.Junction | Man page |
| [.gEdge | Man page |
| [.gNode | Man page |
| [.gWalk | Man page |
| `c.gNode` | Source code |
| `length.gNode` | Source code |
| add_patients_PGV | Source code |
| add_tags_PGV | Source code |
| all.paths | Source code |
| alpha | Source code |
| amp | Man page |
| balance | Man page Source code |
| bcheck | Man page |
| binstats | Man page |
| breakgraph | Source code |
| c | Man page |
| c.Junction | Man page |
| c.gEdge | Man page |
| c.gGraph | Man page |
| c.gNode | Man page |
| c.gWalk | Man page |
| cbind | Man page Source code |
| check.Rcplex.control | Source code |
| chromoplexy | Man page |
| chromothripsis | Man page |
| colnames2 | Man page |
| convertEdges | Man page |
| convex.basis | Source code |
| copy3 | Man page |
| cougar2gg | Man page |
| dedup.cols | Man page |
| del | Man page |
| dim | Man page |
| dim.gGraph | Man page |
| dt_na2false | Man page |
| dunlist | Source code Source code |
| dup | Man page |
| duped | Man page |
| duplicated.matrix | Man page Source code |
| enframe_list | Man page |
| error | Source code Source code |
| events | Man page |
| events.to.gr | Man page |
| file.url.exists | Source code |
| fitcn | Man page |
| footprint | Source code |
| fusions | Man page |
| gEdge | Man page |
| gEdge.in | Man page |
| gEdge.over | Man page |
| gG | Man page |
| gGnome | Man page |
| gGnome-package | Man page |
| gGnome.js | Man page Source code |
| gGraph | Man page Man page |
| gGraph constructor | Man page |
| gGraph.subset | Man page |
| gNode | Man page Man page |
| gNode over | Man page |
| gNode subset | Man page |
| gNode.loose | Man page |
| gW | Man page |
| gWalk | Man page Man page |
| gWalk.over | Man page |
| gWalk.subset | Man page |
| gdist | Man page |
| gen_js_datafiles | Source code |
| gen_js_instance | Source code |
| gr.noval | Man page |
| gr.spreduce | Man page |
| grl | Source code |
| gt.gencode | Source code |
| haplograph | Man page |
| initialize | Man page |
| intersect.Junction | Man page |
| intersect.gEdge | Man page |
| intersect.gNode | Man page |
| isNA | Man page Man page |
| jJ | Man page |
| karyotype | Man page |
| label.runs | Man page Source code |
| length | Man page Source code |
| length.Junction | Man page |
| length.gEdge | Man page |
| length.gGraph | Man page |
| length.gNode | Man page |
| length.gWalk | Man page |
| lengths | Man page |
| lengths.gWalk | Man page |
| loosefix | Man page |
| match3 | Man page |
| merge | Man page |
| merge.Junction | Man page |
| merge.repl | Man page |
| microhomology | Man page |
| na2false | Man page |
| pdist | Source code |
| peel | Man page |
| pgv | Man page Source code |
| phased.binstats | Man page |
| phased.binstats.legacy | Man page |
| ploidy | Man page |
| proximity | Man page Source code |
| ra.duplicated | Man page Source code |
| ra.merge | Man page Source code |
| ra.overlaps | Source code |
| rand.string | Man page |
| read.juncs | Man page |
| read.rds.url | Source code |
| read_cmap | Man page |
| read_vcf | Source code |
| read_xmap | Man page |
| reciprocal | Man page |
| refresh | Man page |
| rel2abs | Man page |
| rep_len2 | Man page Source code |
| rleseq | Man page |
| rowMaxs | Man page |
| rowMins | Man page |
| run_gurobi | Man page Source code |
| seq_along2 | Man page Source code |
| seqinfo | Man page |
| seqlengths | Man page |
| seqlevels | Man page |
| set_reference_files | Source code |
| setcols | Man page |
| setdiff | Man page |
| setxor | Man page |
| shadow | Source code |
| simple | Man page |
| skrub | Source code |
| sparse_subset | Man page Source code |
| split.control.list | Source code |
| split.gGraph | Man page |
| spmelt | Man page |
| sum.gGraph | Man page |
| testOptimizationFunction | Source code |
| tic | Man page |
| toCPXMatrix | Source code |
| transplant | Man page |
| union | Man page |
| unique | Man page |
| unique.Junction | Man page |
| vaggregate | Man page |
| width | Man page |
